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I hard-code links and the affiliate codes are displayed on the browser status line.
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I hard-code links but in a way that affiliate codes are not displayed on the browser status line.
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I use a redirection script to count clicks but hard-code links with affiliate codes as a parameter to the redirect script.
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I use a redirection script that lets me keep affiliate codes in a database but the script doesn't count clicks.
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I use a redirection script that lets me keep affiliate codes in a database and also use the script to count clicks.
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Other - let us know what you do.